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Quick Info
- Secure cloud hosting
- Secure authentication
- 1.0.0
- Sep 11, 2025
AlphaFold
Access the AlphaFold Protein Structure Database for predictions, analysis, and visualization.
Description
• 🧬 **Structure Retrieval**: Get AlphaFold predictions by UniProt ID in PDB, CIF, BCIF, or JSON formats.
• 🔍 **Search & Discovery**: Find proteins by name, gene, or organism.
• 📊 **Confidence Analysis**: Get per-residue confidence scores and identify high/low confidence regions.
• ⚡ **Batch Processing**: Retrieve and analyze multiple protein structures simultaneously.
• 🎨 **Visualization Preparation**: Export data ready for visualization in PyMOL or ChimeraX.
Example prompts:
Copy these prompts to get started quickly with AlphaFold in your Simtheory workspace.
How It Works
1. Install the MCP
Install AlphaFold from your Simtheory workspace with one click.
2. Connect Your Account
Securely authorize access to your AlphaFold account.
3. Start Using
Your AI can now interact with AlphaFold on your behalf.
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