AlphaFold

By: Augmented Nature Research

Access the AlphaFold Protein Structure Database for predictions, analysis, and visualization.

Description

A comprehensive MCP server that provides access to the AlphaFold Protein Structure Database through a rich set of tools for protein structure prediction analysis.

• 🧬 **Structure Retrieval**: Get AlphaFold predictions by UniProt ID in PDB, CIF, BCIF, or JSON formats.
• 🔍 **Search & Discovery**: Find proteins by name, gene, or organism.
• 📊 **Confidence Analysis**: Get per-residue confidence scores and identify high/low confidence regions.
• ⚡ **Batch Processing**: Retrieve and analyze multiple protein structures simultaneously.
• 🎨 **Visualization Preparation**: Export data ready for visualization in PyMOL or ChimeraX.

Example prompts:

Check if a structure is available for the protein TP53

Analyze the confidence scores for human protein P04637

Download the PDB file for protein Q8N726

Prepare the structure of P04637 for PyMOL visualization

List all available protein structures for Homo sapiens

Copy these prompts to get started quickly with AlphaFold in your Simtheory workspace.

How It Works

1. Install the MCP

Install AlphaFold from your Simtheory workspace with one click.

2. Connect Your Account

Securely authorize access to your AlphaFold account.

3. Start Using

Your AI can now interact with AlphaFold on your behalf.

Users also installed these MCPs

BuiltWith

Uncover the hidden tech stack of any website. BuiltWith reveals the web technologies powering domains for competitive analysis, lead generation, and market research.